Non-equilibrium strategies for ligand specificity in signaling networks
Goetz A., Barrios J., Madsen R. R., Dixit P. D.
Signaling networks often encounter multiple ligands and must respond selectively to generate appropriate, context-specific outcomes. At thermal equilibrium, ligand specificity is limited by the relative affinities of ligands for their receptors. Here, we present a non-equilibrium model showing how signaling networks can overcome thermodynamic constraints to preferentially signal from specific ligands while suppressing others. In our model, ligand-bound receptors undergo sequential phosphorylation, with progression restarted by ligand unbinding or receptor degradation. High-affinity complexes are kinetically sorted toward degradation-prone states, while low-affinity complexes are sorted towards inactivated states, both limiting signaling. As a result, network activity is maximized for ligands with intermediate affinities. This mechanism explains paradoxical experimental observations in receptor tyrosine kinase (RTK) signaling, including non-monotonic relationships between ligand affinity, kinase activity, and signaling output. Given the ubiquity of multi-site phosphorylation and ligand-induced degradation across signaling pathways, we propose that {\it kinetic sorting} provides a general non-equilibrium strategy for ligand discrimination in cellular networks.
:bioRxiv
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